There are 36 member associations under the PFF.
- Agusan del Sur – Surigao del Sur RFA
- Cordillera RFA
- Bukidnon F.A.
- Butuan – Agusan Del Norte FA
- RFA of Camarines Norte
- Camiguin-Misamis Oriental FA
- Central Visayas RFA
- Golden Davao RFA
- North Davao RFA
- Davao RFA
- Iligan – Lanao del Norte – Lanao del Sur RFA
- Iloilo FA
- Laguna – Cavite RFA
- Legazpi City – Albay Federated RFA
- Eastern Visayas RFA
- Federated FA of Masbate
- Central Bicol RFA
- National Capital Region FA
- Negros Occidental FA
- Negros Oriental – Siquijor RFA
- Maguindanao-Cotabato City FA
- Misamis Occidental – Ozamis FA
- Mount Apo RFA
- Oriental Mindoro FA
- Quezon – Batangas RFA
- FA of Rizal
- South Cotabato – Sarangani – Gen. Santos City RFA (SOCSARGEN RFA)
- Sultan Kudarat RFA
- Surigao del Norte and Dinagat Islands RFA
- Central Luzon RFA
- Zamboanga del Norte – Dipolog RFA
- Pagadian – Zamboanga del Sur – Sibugay RFA
- Zamboanga – Basilan – Sulu – Tawi-tawi FA (ZAMBASULTA FA)
- Kaya FC–Iloilo
- Stallion Laguna FC
- United City FC